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Converting the file: PyramidalCell.xml
NeuroML Level 3 file
| General notes | NeuroML Level 2 file generated by NEURON 6.1 ModelViewer
Authors: Michael Hines, Sushil Kambampati and Padraig Gleeson,
Yale University and UCL |
Cell: soma
| Name | soma |
| Description |
| As described in the NeuroML file |
| Cell: soma exported from NEURON ModelView |
| Total number of segments | 2037 |
| Total number of cables | 79
with 0 soma cable(s),
0 dendritic cable(s)
and 0 axonal cable(s)
|
| Cable details |
soma (id:0), fraction along parent cable: 0,
number of segments in cable: 27
dendrite_8_0 (id:78), fraction along parent cable: 0.5,
number of segments in cable: 37
dendrite_7_0 (id:69), fraction along parent cable: 0.5,
number of segments in cable: 5
dendrite_6_0 (id:60), fraction along parent cable: 0.5,
number of segments in cable: 5
dendrite_5_0 (id:59), fraction along parent cable: 0.5,
number of segments in cable: 86
dendrite_4_0 (id:46), fraction along parent cable: 0.5,
number of segments in cable: 8
dendrite_3_0 (id:35), fraction along parent cable: 0.5,
number of segments in cable: 11
dendrite_2_0 (id:32), fraction along parent cable: 0.5,
number of segments in cable: 6
dendrite_1_0 (id:1), fraction along parent cable: 0.5,
number of segments in cable: 3
dendrite_7_4 (id:73),
number of segments in cable: 6
dendrite_7_1 (id:70),
number of segments in cable: 15
dendrite_6_6 (id:66),
number of segments in cable: 17
dendrite_6_1 (id:61),
number of segments in cable: 17
dendrite_4_6 (id:52),
number of segments in cable: 12
dendrite_4_1 (id:47),
number of segments in cable: 23
dendrite_3_4 (id:39),
number of segments in cable: 2
dendrite_3_1 (id:36),
number of segments in cable: 33
dendrite_2_2 (id:34),
number of segments in cable: 84
dendrite_2_1 (id:33),
number of segments in cable: 68
dendrite_1_2 (id:3),
number of segments in cable: 4
dendrite_1_1 (id:2),
number of segments in cable: 63
dendrite_7_6 (id:75),
number of segments in cable: 7
dendrite_7_5 (id:74),
number of segments in cable: 61
dendrite_7_3 (id:72),
number of segments in cable: 15
dendrite_7_2 (id:71),
number of segments in cable: 12
dendrite_6_8 (id:68),
number of segments in cable: 5
dendrite_6_7 (id:67),
number of segments in cable: 4
dendrite_6_3 (id:63),
number of segments in cable: 3
dendrite_6_2 (id:62),
number of segments in cable: 13
dendrite_4_10 (id:56),
number of segments in cable: 16
dendrite_4_7 (id:53),
number of segments in cable: 11
dendrite_4_5 (id:51),
number of segments in cable: 4
dendrite_4_2 (id:48),
number of segments in cable: 13
dendrite_3_10 (id:45),
number of segments in cable: 12
dendrite_3_5 (id:40),
number of segments in cable: 6
dendrite_3_3 (id:38),
number of segments in cable: 62
dendrite_3_2 (id:37),
number of segments in cable: 24
dendrite_1_4 (id:5),
number of segments in cable: 3
dendrite_1_3 (id:4),
number of segments in cable: 22
dendrite_7_8 (id:77),
number of segments in cable: 7
dendrite_7_7 (id:76),
number of segments in cable: 7
dendrite_6_5 (id:65),
number of segments in cable: 8
dendrite_6_4 (id:64),
number of segments in cable: 20
dendrite_4_12 (id:58),
number of segments in cable: 65
dendrite_4_11 (id:57),
number of segments in cable: 79
dendrite_4_9 (id:55),
number of segments in cable: 10
dendrite_4_8 (id:54),
number of segments in cable: 18
dendrite_4_4 (id:50),
number of segments in cable: 4
dendrite_4_3 (id:49),
number of segments in cable: 4
dendrite_3_9 (id:44),
number of segments in cable: 77
dendrite_3_6 (id:41),
number of segments in cable: 10
dendrite_1_6 (id:7),
number of segments in cable: 3
dendrite_1_5 (id:6),
number of segments in cable: 8
dendrite_3_8 (id:43),
number of segments in cable: 9
dendrite_3_7 (id:42),
number of segments in cable: 6
dendrite_1_8 (id:9),
number of segments in cable: 122
dendrite_1_7 (id:8),
number of segments in cable: 61
dendrite_1_14 (id:15),
number of segments in cable: 99
dendrite_1_9 (id:10),
number of segments in cable: 115
dendrite_1_22 (id:23),
number of segments in cable: 47
dendrite_1_15 (id:16),
number of segments in cable: 50
dendrite_1_13 (id:14),
number of segments in cable: 87
dendrite_1_10 (id:11),
number of segments in cable: 10
dendrite_1_28 (id:29),
number of segments in cable: 48
dendrite_1_23 (id:24),
number of segments in cable: 52
dendrite_1_19 (id:20),
number of segments in cable: 22
dendrite_1_16 (id:17),
number of segments in cable: 31
dendrite_1_12 (id:13),
number of segments in cable: 7
dendrite_1_11 (id:12),
number of segments in cable: 8
dendrite_1_30 (id:31),
number of segments in cable: 10
dendrite_1_29 (id:30),
number of segments in cable: 39
dendrite_1_25 (id:26),
number of segments in cable: 1
dendrite_1_24 (id:25),
number of segments in cable: 6
dendrite_1_21 (id:22),
number of segments in cable: 7
dendrite_1_20 (id:21),
number of segments in cable: 5
dendrite_1_18 (id:19),
number of segments in cable: 12
dendrite_1_17 (id:18),
number of segments in cable: 16
dendrite_1_27 (id:28),
number of segments in cable: 11
dendrite_1_26 (id:27),
number of segments in cable: 11
|
| Cable Groups |
| Groups of cables defined, for example, to allow easier specification of channel location |
|
all
contains 79 cables:
soma (id:0)
dendrite_8_0 (id:78)
dendrite_7_0 (id:69)
dendrite_6_0 (id:60)
dendrite_5_0 (id:59)
dendrite_4_0 (id:46)
dendrite_3_0 (id:35)
dendrite_2_0 (id:32)
dendrite_1_0 (id:1)
dendrite_7_4 (id:73)
dendrite_7_1 (id:70)
dendrite_6_6 (id:66)
dendrite_6_1 (id:61)
dendrite_4_6 (id:52)
dendrite_4_1 (id:47)
dendrite_3_4 (id:39)
dendrite_3_1 (id:36)
dendrite_2_2 (id:34)
dendrite_2_1 (id:33)
dendrite_1_2 (id:3)
dendrite_1_1 (id:2)
dendrite_7_6 (id:75)
dendrite_7_5 (id:74)
dendrite_7_3 (id:72)
dendrite_7_2 (id:71)
dendrite_6_8 (id:68)
dendrite_6_7 (id:67)
dendrite_6_3 (id:63)
dendrite_6_2 (id:62)
dendrite_4_10 (id:56)
dendrite_4_7 (id:53)
dendrite_4_5 (id:51)
dendrite_4_2 (id:48)
dendrite_3_10 (id:45)
dendrite_3_5 (id:40)
dendrite_3_3 (id:38)
dendrite_3_2 (id:37)
dendrite_1_4 (id:5)
dendrite_1_3 (id:4)
dendrite_7_8 (id:77)
dendrite_7_7 (id:76)
dendrite_6_5 (id:65)
dendrite_6_4 (id:64)
dendrite_4_12 (id:58)
dendrite_4_11 (id:57)
dendrite_4_9 (id:55)
dendrite_4_8 (id:54)
dendrite_4_4 (id:50)
dendrite_4_3 (id:49)
dendrite_3_9 (id:44)
dendrite_3_6 (id:41)
dendrite_1_6 (id:7)
dendrite_1_5 (id:6)
dendrite_3_8 (id:43)
dendrite_3_7 (id:42)
dendrite_1_8 (id:9)
dendrite_1_7 (id:8)
dendrite_1_14 (id:15)
dendrite_1_9 (id:10)
dendrite_1_22 (id:23)
dendrite_1_15 (id:16)
dendrite_1_13 (id:14)
dendrite_1_10 (id:11)
dendrite_1_28 (id:29)
dendrite_1_23 (id:24)
dendrite_1_19 (id:20)
dendrite_1_16 (id:17)
dendrite_1_12 (id:13)
dendrite_1_11 (id:12)
dendrite_1_30 (id:31)
dendrite_1_29 (id:30)
dendrite_1_25 (id:26)
dendrite_1_24 (id:25)
dendrite_1_21 (id:22)
dendrite_1_20 (id:21)
dendrite_1_18 (id:19)
dendrite_1_17 (id:18)
dendrite_1_27 (id:28)
dendrite_1_26 (id:27)
|
ModelViewParmSubset_1
contains 77 cables:
dendrite_8_0 (id:78)
dendrite_7_0 (id:69)
dendrite_6_0 (id:60)
dendrite_4_0 (id:46)
dendrite_3_0 (id:35)
dendrite_2_0 (id:32)
dendrite_1_0 (id:1)
dendrite_7_4 (id:73)
dendrite_7_1 (id:70)
dendrite_6_6 (id:66)
dendrite_6_1 (id:61)
dendrite_4_6 (id:52)
dendrite_4_1 (id:47)
dendrite_3_4 (id:39)
dendrite_3_1 (id:36)
dendrite_2_2 (id:34)
dendrite_2_1 (id:33)
dendrite_1_2 (id:3)
dendrite_1_1 (id:2)
dendrite_7_6 (id:75)
dendrite_7_5 (id:74)
dendrite_7_3 (id:72)
dendrite_7_2 (id:71)
dendrite_6_8 (id:68)
dendrite_6_7 (id:67)
dendrite_6_3 (id:63)
dendrite_6_2 (id:62)
dendrite_4_10 (id:56)
dendrite_4_7 (id:53)
dendrite_4_5 (id:51)
dendrite_4_2 (id:48)
dendrite_3_10 (id:45)
dendrite_3_5 (id:40)
dendrite_3_3 (id:38)
dendrite_3_2 (id:37)
dendrite_1_4 (id:5)
dendrite_1_3 (id:4)
dendrite_7_8 (id:77)
dendrite_7_7 (id:76)
dendrite_6_5 (id:65)
dendrite_6_4 (id:64)
dendrite_4_12 (id:58)
dendrite_4_11 (id:57)
dendrite_4_9 (id:55)
dendrite_4_8 (id:54)
dendrite_4_4 (id:50)
dendrite_4_3 (id:49)
dendrite_3_9 (id:44)
dendrite_3_6 (id:41)
dendrite_1_6 (id:7)
dendrite_1_5 (id:6)
dendrite_3_8 (id:43)
dendrite_3_7 (id:42)
dendrite_1_8 (id:9)
dendrite_1_7 (id:8)
dendrite_1_14 (id:15)
dendrite_1_9 (id:10)
dendrite_1_22 (id:23)
dendrite_1_15 (id:16)
dendrite_1_13 (id:14)
dendrite_1_10 (id:11)
dendrite_1_28 (id:29)
dendrite_1_23 (id:24)
dendrite_1_19 (id:20)
dendrite_1_16 (id:17)
dendrite_1_12 (id:13)
dendrite_1_11 (id:12)
dendrite_1_30 (id:31)
dendrite_1_29 (id:30)
dendrite_1_25 (id:26)
dendrite_1_24 (id:25)
dendrite_1_21 (id:22)
dendrite_1_20 (id:21)
dendrite_1_18 (id:19)
dendrite_1_17 (id:18)
dendrite_1_27 (id:28)
dendrite_1_26 (id:27)
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ModelViewParmSubset_2
contains 2 cables:
soma (id:0)
dendrite_5_0 (id:59)
|
|
Biophysical properties of cell: soma
| Unit system of biophysical entities |
| This can be either SI Units or Physiological Units |
| Physiological Units |
| Channel Mechanism: pas |
| An active membrane conductance |
|
This is a Passive Conductance and so conductance density (gmax) and
reversal potential (e) should be sufficient parameters to specify the mechanism fully.
Conductance density (gmax) of 0.1 mS cm-2 on: ModelViewParmSubset_1
Reversal potential (e) of -65 mV on: ModelViewParmSubset_1
|
| Channel Mechanism: hh |
| An active membrane conductance |
|
Parameter gnabar has value 0.12 on: ModelViewParmSubset_2
Parameter gkbar has value 0.036 on: ModelViewParmSubset_2
Parameter gl has value 0.0003 on: ModelViewParmSubset_2
Parameter el has value -54.3 on: ModelViewParmSubset_2
|
| Specific Capacitance |
| This is the capacitance per unit area of the membrane |
| Specific Capacitance of
1 uf/cm2 on: all
|
| Specific Axial Resistance |
| This is the specific cytoplasmic resistance along a dendrite/axon |
| Specific Axial Resistance of
0.1 Kohm cm on: all
|
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